Primer sequences used for trained Silva119 515F/806R?

[thermokarst]

Hi @ctekellogg --- Click on the boxes above your currently select ones - they should correspond to the import steps for the input artifacts used to fit the classifier:

The md5 sum is over to the right: a86c94ce8d58ea9154fb88b05c123b02, as well as the name of the imported file. You can compute the md5sum of the file in question and compare the hashes to verify if that is the same file.

Also worth noting, Silva 119 is the latest version of Silva that is easily imported into QIIME 2, see this thread for more details:

Preparing SILVA132 for QIIME1/2 Use

Hello Peter, I’ve also emailed the maintainers of SILVA about this, as they had wanted to take over the creation of the QIIME-compatible databases at one point (although the response might be delayed at this point due to the holidays). In any case, I think the order should be this: prep_silva_data.py (on the 132 fasta file from SILVA that has taxonomy strings in the labels). Then, the output taxonomy file from this can first be checked for non-ASCII or * characters with parse_nonstandard_cha…

Thanks!