I want to place my sequences on to a reference tree using pplacer. I have never used it before. How can I use it with QIIME2. What file should be used as input to pplacer.
If there is any other program that can help me place my sequences on a reference tree?
With the q2-fragment-insertion plugin!
Check out this tutorial for an example of how to use it:
Thanks, But this method doesnot place my sequences onto the tree which has names of all the species.
I am looking for something that can place my sequences on a reference tree and then I can edit it in iTOL.
q2-fragment-insertion will produce just such an Artifact.
I’m not sure I follow - can you please elaborate?
Sorry for being vague. I got it now!
Thanks for the help
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