Hi everyone!
I have this code:
INPUT_DIR=/Users/valentinagirardi/Downloads/Bioinf-enero/20_dada2
OUTPUT_DIR=/Users/valentinagirardi/Downloads/Bioinf-enero/30_taxonomy_assignment
mkdir ${OUTPUT_DIR}
qiime feature-classifier classify-sklearn --i-reads 20_dada2/dada2-rep-seqs.qza --i-classifier classifier_16S_V3-V4.qza --p-n-jobs 1 --p-reads-per-batch 1000 --o-classification classified_rep_seqs.qza
mv classified_rep_seqs.qza ${OUTPUT_DIR}/.
and I get this error: Error: QIIME 2 has no plugin/command named 'feature-classifier'. And when I put qiime info into the terminal the plugin 'feature-classifier' doesn't appear.
I already tried:
-
updating conda:
conda update -n base conda -
removing and creating again the conda environment:
conda deactivate
conda remove --name qiime2-2020.8 --all
conda create -n qiime2-2020.8 python=3.6
conda activate qiime2-2020.8
conda install -c qiime2/label/r2020.8 -c conda-forge -c bioconda qiime2 -
checking the channels configuration:
conda config --show channels
(and qiime appears first on the list) -
creating a new Conda environment without predefined channels:
conda create -n nuevo_entorno python=3.6
conda activate nuevo_entorno
conda install -c qiime2/label/r2020.8 -c conda-forge -c bioconda qiime2