I am learning how to train my own classifer. Thus far, i believe I have done relatively well. I am able to generate a taxonomy.gzv file that with similar species identifications I obtained from BLAST of rep-seq.qzv files. However, when I try to make a taxa box plot with the following code:
Given your error, I would focus to look more into the way you filtered your data to obtain the ‘feature-frequency-filtered-table.qza’ and especially ‘feature-frequency-filtered-rep-seqs.qza’. How did you get those?
For the taxa-barplot, you could try to get the taxonomy for the unfiltered set and use this instead ‘feature-frequency-filtered-rep-seqs.qza’. The taxa barplot plug-in should not be bothered to have more feature in the taxonomy qza file than the specified abundance qza file (this will be used as filter behind the scene).
For other analyses, I would first double check that the ‘feature-frequency-filtered-table.qza’ and ‘feature-frequency-filtered-rep-seqs.qza’ contain the same features!
Thank you for the welcome, and thank you very much for your recommendations. As it turns out, you were indeed correct. It was an issue regarding my filtering. I restarted the filtering process (I was trying to filter out low frequency reads) I believe the error I made was in not filtering the rep-seqs to match that of the table.
Once I reconstructed those artifacts I was able to generate a successful bar plot. Thanks very much for your help.