I was using SCNIC on qiime2-2018.11 version and it worked!
But something wrong happened when I try to make a sparcc correlation network by P-value through
% qiime SCNIC build-correlation-network-p –i-correlation-table fake_correls.qza –p-max-val .05 –o-correlation-network fake_net.qza
And I got these:
Plugin error from SCNIC:
No p or p_adj in correls
Then I checked the correls data generated from
qiime SCNIC calculate-correlations , no P-value column were found in the file.
I also checked the source code in Github , I noticed that there was a default parameters sparcc_p in function
calculate-correlations set to FALSE. And I was not able to set it to TRUE by parameters in
qiime SCNIC calculate-correlations.
Does this happened to be a bug? or I missed someting else?
Thanks a lot for the useful tools and I am looking forward to your reply.