Hi @thermokarst, please see the output below:
/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/sklearn/metrics/pairwise.py:1575: DataConversionWarning: Data was converted to boolean for metric jaccard
warnings.warn(msg, DataConversionWarning)
Traceback (most recent call last):
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/q2cli/commands.py", line 327, in __call__
results = action(**arguments)
File "</data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/decorator.py:decorator-gen-390>", line 2, in core_metrics_phylogenetic
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 240, in bound_callable
output_types, provenance)
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 477, in _callable_executor_
outputs = self._callable(scope.ctx, **view_args)
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/q2_diversity/_core_metrics.py", line 59, in core_metrics_phylogenetic
metric='unweighted_unifrac', n_jobs=n_jobs)
File "</data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/decorator.py:decorator-gen-482>", line 2, in beta_phylogenetic
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 240, in bound_callable
output_types, provenance)
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/action.py", line 411, in _callable_executor_
spec.qiime_type, output_view, spec.view_type, prov)
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/sdk/result.py", line 273, in _from_view
provenance_capture=provenance_capture)
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/core/archive/archiver.py", line 316, in from_data
Format.write(rec, type, format, data_initializer, provenance_capture)
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/core/archive/format/v5.py", line 21, in write
provenance_capture)
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/core/archive/format/v1.py", line 26, in write
prov_dir, [root / cls.METADATA_FILE, archive_record.version_fp])
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 313, in finalize
self.write_citations_bib()
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/core/archive/provenance.py", line 304, in write_citations_bib
self.citations.save(str(self.path / self.CITATION_FILE))
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/qiime2/core/cite.py", line 71, in save
bp.dump(db, f, writer=writer)
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/site-packages/bibtexparser/__init__.py", line 111, in dump
bibtex_file.write(writer.write(bib_database))
File "/data/apps/anaconda/3.6-4.3.1/envs/qiime2-2019.7/lib/python3.6/encodings/iso8859_15.py", line 19, in encode
return codecs.charmap_encode(input,self.errors,encoding_table)[0]
UnicodeEncodeError: 'charmap' codec can't encode character '\u03b2' in position 3464: character maps to <undefined>
Plugin error from diversity:
'charmap' codec can't encode character '\u03b2' in position 3464: character maps to <undefined>
See above for debug info.