Hello Forum,
I am a Fresh user here, and would appreciate any help in this error message I had when running "qiime diversity core-metrics-phylogenetic" command:
Plugin error from diversity:
** Ordinations with less than two dimensions are not supported.**
Debug info has been saved to /tmp/qiime2-q2cli-err-lxzrblxo.log
And the exact command I used was:
qiime diversity core-metrics-phylogenetic *
** --i-phylogeny rooted-tree.qza *
** --i-table table.qza **
** --p-sampling-depth 90806 **
** --m-metadata-file sample-metadata.tsv **
** --output-dir core-metrics-results **
** --p-n-jobs-or-threads 15**
I have read through the forum and tried the two checks suggested, but were still unable to resolve the issue. Would be much grateful of any help! Thanks!
Check1: If the number of sample is 1? --> No, I have 14 samples.
Check2: If the sample-id match between the feature table and the metadata? --> Yes, they do match.
Here I post the files that may be needed in debugging:
rooted-tree.qza (87.8 KB)sample-metadata.tsv (917 Bytes) table.qzv (517.7 KB)
Would be very grateful of any pointers to direct me to solve the issue!
Regards,
Elly