Plugin error from diversity core-metrics-phylogenetic during a re-analysis

[colinbrislawn (Colin J Brislawn)]

Hello Carie,

I'm glad you found the source of the error! I appreciate that you shared the solution too.

@Carie_Frantz

Is there an easy command to check that all features in a feature-table are also present in rep-seq?

It can be done with some plugins but it might be easier with the API:

Plug-in error with feature-table filter-seqs & QIIME2 version variability?

Is it possible that your Feature IDs in your FeatureTable[Frequency] don't match the Feature IDs in your FeatureData[Sequence]? You can check this by running summarize on the FeatureTable[Frequency] and tabulate-seqs on the FeatureData[Sequence] and comparing the Feature IDs listed in the two locations. Alternatively, you can perform this check using the QIIME 2 Artifact API in python: import qiime2 import pandas as pd table_fp = 'my_path/table-nonchimeric-wo-borderline.qza' seqs_fp = 'my_pat…