Plugin error from dada2 - exit code 1

Hi,

I was attempting to run dada2 on a cluster to denoise my data and received this error:
Plugin error from dada2:

An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more.

log file details:
Command: run_dada_paired.R /tmp/tmpv_oc6ava/forward /tmp/tmpv_oc6ava/reverse /tmp/tmpv_oc6ava/output.tsv.biom /tmp/tmpv_oc6ava/track.tsv /tmp/tmpv_oc6ava/filt_f /tmp/tmpv_oc6ava/filt_r 180 180 0 0 2.0 2 consensus 1.0 1 1000000

R version 3.4.1 (2017-06-30)
Loading required package: Rcpp
Error: package or namespace load failed for ‘dada2’ in dyn.load(file, DLLpath = DLLpath, …):
unable to load shared object ‘/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/R/library/RCurl/libs/RCurl.so’:
/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/R/library/RCurl/libs/…/…/…/…/./libcom_err.so.3: symbol k5_strerror_r, version krb5support_0_MIT not defined in file libkrb5support.so.0 with link time reference
Execution halted
Traceback (most recent call last):
File “/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/python3.5/site-packages/q2_dada2/_denoise.py”, line 229, in denoise_paired
run_commands([cmd])
File “/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/python3.5/site-packages/q2_dada2/_denoise.py”, line 36, in run_commands
subprocess.run(cmd, check=True)
File “/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/python3.5/subprocess.py”, line 398, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command ‘[‘run_dada_paired.R’, ‘/tmp/tmpv_oc6ava/forward’, ‘/tmp/tmpv_oc6ava/reverse’, ‘/tmp/tmpv_oc6ava/output.tsv.biom’, ‘/tmp/tmpv_oc6ava/track.tsv’, ‘/tmp/tmpv_oc6ava/filt_f’, ‘/tmp/tmpv_oc6ava/filt_r’, ‘180’, ‘180’, ‘0’, ‘0’, ‘2.0’, ‘2’, ‘consensus’, ‘1.0’, ‘1’, ‘1000000’]’ returned non-zero exit status 1

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File “/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/python3.5/site-packages/q2cli/commands.py”, line 274, in call
results = action(**arguments)
File “”, line 2, in denoise_paired
File “/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/python3.5/site-packages/qiime2/sdk/action.py”, line 231, in bound_callable
output_types, provenance)
File “/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/python3.5/site-packages/qiime2/sdk/action.py”, line 366, in callable_executor
output_views = self._callable(**view_args)
File “/PHShome/sy282/miniconda2/envs/qiime2-2018.4/lib/python3.5/site-packages/q2_dada2/_denoise.py”, line 244, in denoise_paired
" and stderr to learn more." % e.returncode)
Exception: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more.

My qiime command was:
qiime dada2 denoise-paired
–i-demultiplexed-seqs demux-paired-end.qza
–o-table table
–o-representative-sequences rep-seqs
–o-denoising-stats denoising-stats.qza
–p-trim-left-f 0
–p-trim-left-r 0
–p-trunc-len-f 180
–p-trunc-len-r 180

conda 4.5.2
qiime2-2018.4
R version 3.4.1 (2017-06-30)

This error is similar to: Qiime2-2018.2, dada2 denoising, error (return code 1) Qiime2-2018.2, dada2 denoising, error (return code 1)

I have uninstalled and re-installed q2 twice already with no change.

Would appreciate any suggestions.

An off-topic reply has been merged into an existing topic: Problems with dada2 - Qiime2 installed locally on a cluster

Please keep replies on-topic in the future.