Plugin error from dada2:
[Errno 2] No such file or directory: 'run_dada_paired.R'
I'm running qiime2-p3.6.5 via Terminal installed on a university cluster, and have been able to successfully run all the Atacama Soils tutorial steps successfully up til this point.
Did you run both of those commands in the same conda environment? The conda info command seems to indicate that you ran the command in your base environment...
I just noticed that the user accounts in this thread swapped --- I thought I was talking to the same person the whole time. In the future @qiuwa, it is usually best to start a new topic, rather than hijack someone else's thread! I split your thread out into a new topic, @qiuwa
Just to clarify, @quiwa and I are working together on this. They are the research computing person, and I'm the biologist. I asked for help answering some of your questions, and then have been monitoring as it seems the issue was related to the installation.
Yes. The same conda enviorment. I installed it and made module to export the path. I install qiime for her group to use. We had the same error. Should I do any variables setting? Thanks, Wei