Plugin error from dada2: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more

[thermokarst]

Hi there @steffi!

@steffi

Remove chimeras (method = consensus)
Error in isBimeraDenovoTable(unqs[[i]], …, verbose = verbose) :
Input must be a valid sequence table.
Calls: removeBimeraDenovo -> isBimeraDenovoTable

This error comes from DADA2 when none of your paired-end reads were successfully joined. Perhaps your trimming parameters were too aggressive? How big is the region your primers are targeting?