Dear QIIME2 team,
I would like to know if there is a way of translating pathway and KEGG orthologs IDs into the actual pathway and gene names. Here you have examples of multiple IDs pathways:
PWY-1269
PWY-1361
POLYISOPRENSYN-PWY
PPGPPMET-PWY
PRPP-PWY
…
Note that those are MetaCyc pathway ids rather than KEGG pathway ids by the way.
You might run into issues running the add_description.py script on the BIOM file straight from QIIME 2, but if so you can also see the mapping file of pathway ids to pathway names in this file within the PICRUSt2 github repo: picrust2/default_files/description_mapfiles/metacyc_pathways_info.txt.gz
Thanks @gmdouglas!
I found it! Thank you also for the clarification about the MetaCyc pathway ids rather than KEGG pathway ids.
I really appreciate your help!
Best!
Daniela