Phylogenetic tree with abundance

[SoilRotifer (Mike Robeson)]

Hi @SilviaT,

One way to get the taxonomy for a specific feature is to follow the procedure here:

How to build an OTU table

Hi @neocat, This is intended. If you work through the tutorials again, you'll notice that the feature-table (i.e. the counts table) is kept as a separate file from the taxonomy. I suggest reading through the overview, for more details. If you'd like to take a quick look at an old-style QIIME 1 like table, you can run the following commands: qiime feature-table transpose \ --i-table table.qza \ --o-transposed-feature-table table-transposed.qza qiime metadata tabulate \ -…

Then you can create any array of figures you'd like.

Alternatively, you can try using q2-empress.

-Cheers!