Hi all,
Hope everyone is doing well.
I have a question specifically for the step calculating the PERMANOVA using the command beta-group-significance. Is there a way I can calculate the R2 there and get the value in the table together with the pvalues?
beta-group-significance
I would appreciate your help. Thanks! Ida
Hi @idapantoja, beta-group-significance does not report an R2 value. You could use qiime diversity adonis instead, which does report an R2 value.
qiime diversity adonis
Good luck!
Hi @Nicholas_Bokulich!
Thanks so much for the response! Adonis use Permanova too?
Ida
Yes, see here for details: https://www.rdocumentation.org/packages/vegan/versions/2.4-2/topics/adonis
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