Performing Procrustes Analysis

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1

Hi, community,

I know that qiime1 has the Performing Procrustes Analysis protocal. May I know is that available to do this in qiime2, or how to transform the qiime2 produced data into qiime1 can process?

Thanks in advance.

3

Hi @Brandon, This is planned for the QIIME 2 2018.4 release, being developed by @yoshiki.

If you need to do this sooner, you could export your PCoA files with the following commands, and then use the QIIME 1 scripts:

qiime tools export unweighted_unifrac_pcoa_results.qza --output-dir unweighted_unifrac_pcoa_results
5

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6

Just in case, this was added in 2018.4.

Here's a link to the method itself in q2-diversity and in Emperor.

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