I see percentage in this bar plot but it does not show up when I download the file in CSV. How can I get that percentage in my CSV table? is there any other way to do it?
Welcome to the forum!
The relative abundances are calculated for the visualization only, so if you wanted those values you have 2 options:
A) download the total frequency CSV as you have and simply transform those to relative abundance in your favorite data management software.
B) Use the feature-table relative-frequency action to convert your feature-table into a relative abundance table, then you can export this table as a biom table as described here. Then you can use the biom table or convert it to a text file with:
biom convert --to-tsv -i feature-table.biom -o table.tsv
Thank you Mehrbod_Estaki!
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