I see percentage in this bar plot but it does not show up when I download the file in CSV. How can I get that percentage in my CSV table? is there any other way to do it?
Hi @saryal2,
Welcome to the forum!
The relative abundances are calculated for the visualization only, so if you wanted those values you have 2 options:
A) download the total frequency CSV as you have and simply transform those to relative abundance in your favorite data management software.
B) Use the feature-table relative-frequency action to convert your feature-table into a relative abundance table, then you can export this table as a biom table as described here. Then you can use the biom table or convert it to a text file with:
biom convert --to-tsv -i feature-table.biom -o table.tsv
Happy Qiimin’
2 Likes
Thank you Mehrbod_Estaki!
1 Like
This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.