There is quiet big variance explained by the first axis and there is a clear separation of data along that axis, however, none of the metadata categories can explain this separation. How should one analyse further in this case?
Hi!
What about other beta diversity metrics? Each metric calculated differently from others, and by comparing, which metrics are responding to the treatments, you may gain some interesting insights.
I agree with @timanix, other metrics may give you a different picture. A second question: is this at all related to a technical effect? Are you able to go back and get information about storage, extraction and sequencing? Often a large seperation can be due to technical confounding.