I have used PacBio sequencing to amplify whole 16S gene for my metagenomics project. I have obtained the FASQ files for this project. My question is that can I use QIIME2 as a pipeline to run this dataset? Or i need to use other pipeine.
Yes, q2-dada now supports
denoise-ccs. Check out the docs here:
Let us know if you have any questions about using this pipeline.
Thank you collin, I will try this.
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