PacBio whole 16S amplification - Can QIMME2 be used


I have used PacBio sequencing to amplify whole 16S gene for my metagenomics project. I have obtained the FASQ files for this project. My question is that can I use QIIME2 as a pipeline to run this dataset? Or i need to use other pipeine.


Good morning,

Yes, q2-dada now supports denoise-ccs. Check out the docs here:

Let us know if you have any questions about using this pipeline.

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Thank you collin, I will try this.

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