Hi all, I have a few questions concerning what some options in Feature-table group and merge specifically do.
What does it mean to use sum vs median ceiling vs mean ceiling? I am not clear on what it means by grouping based on “ceiling”. Are there advantages/disadvantages to using either one?
What are the functions of the different overlap methods (error_on_overlapping_sample, error_on_overlapping_feature, sum). They each produce very different sequence counts. Do the overlapping methods filter out features or samples that show up multiple times?