Hi qiime2 team,
I just installed the newest version of qiime2 (2023.2) and when I run dada2 denoise-paired (below the code) that works fine using 2021.11, I get the following error in stdout:
R version 4.2.2 (2022-10-31)
Loading required package: Rcpp
Error: package or namespace load failed for ‘dada2’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
namespace ‘vctrs’ 0.4.1 is being loaded, but >= 0.5.0 is required
I tried updating all packages within R using update.packages(), but still get this error.. Not sure how to solve it?
Thanks for your help!
ps. Here's the code I was trying to run, but like I said, this works fine in 2021.11
qiime dada2 denoise-paired
--p-n-threads 20
--i-demultiplexed-seqs 2_Trim-primers/primer-trimmed.qza
--p-trunc-len-f 130
--p-trunc-len-r 130
--o-table 4_Denoising-DADA2/table-trimmed.qza
--o-representative-sequences 4_Denoising-DADA2/rep-trimmed-seqs.qza
--o-denoising-stats 4_Denoising-DADA2/denoising-trimmed-stats.qza