I run this command in order to filter short length sequences less than 290 nt.
My problem is it is running more than 24 hours.
qiime rescript filter-seqs-length-by-taxon \
--i-sequences RefsequencesdsrB.qza \ --i-taxonomy dsrB.qza \ --p-labels bacteria \ --p-min-lens 290 \ --o-filtered-seqs ncbi-refseqsnew.qza \ --o-discarded-seqs ncbi-refseqs-tooshortnew.qza
Is there option/parameter to know how long should I wait for? Is there a problem? It sounds unusual, I suppose!
Best regards,
Qiimer