mismatch between taxonomy and sequence data that download from NCBI using qiime rescript get-ncbi-data

[SoilRotifer (Mike Robeson)]

Hi @Si_Vivy,

Thank you for providing your commands. Very helpful!

This thread may help explain the issue:

dereplication error with data collected from `get-ncbi-data` command

A collection of sequence and taxonomy data were obtained running @BenKaehler's fantastic get-ncbi-data command within RESCRIPt. Raw sequence data collected from get-ncbi-data are available here Raw taxonomy data collected from get-ncbi-data are available here I had intended on filtering and dereplicating these sequences using a series of RESCRIPt commands: cull-seqs and filter-seqs-length to filter, and dereplicate to ... well, dereplicate. While the filtering commands completed successfully…

-Mike