First of all Congratulations to all of you for the New Release!!! I am excited.
I started learning and using Qiime 2 not too long ago (approx. 4-5 months) for analyzing 16S amplicon sequencing data (cyanobacteria associated microbiome). I have the following questions related to the analysis:
Script to analyze the core microbiome per specimen/ per species in qimme 2
Script to follow - in order to remove the sequences of the host species qiime 2
How to do the network analysis in qiime 2? (the specific script to follow?)
I would really appreciate your help in this matter. Please let me know if more information is needed.
I just want to mention that Im not sure q2-SCNIC is supported past the 2018.11 release. (I haven’t gotten it to work with more recent updates). Its a little bit finicky to get to work, but Ive gotten some really nice networks out of it.