Sorry to ask for help again, but I have been running qiime2 on my 6 runs, and the first 4 are demultiplexing fine, but on the last two I get an error.
I am working on a cluster with >30 cores available, and I have one terminal open for each run.
Thank you.
My code right now is this:
(qiime2) ekg43@thompson:~/Run5$ ls
barcodes.fastq.gz raw-sequences5.qza sequences.fastq.gz
(qiime2) ekg43@thompson:~/Run5$ qiime demux emp --i-seqs raw-sequences5.qza --m-barcodes-file /home/ekg43/maps/QiimeMapBTIrun5.txt --m-barcodes-category BarcodeSequence --o-per-sample-sequences /home/ekg43/Run5/demux5
Traceback (most recent call last):
File “/home/ekg43/miniconda2/envs/qiime2/bin/qiime”, line 6, in
sys.exit(q2cli.main.qiime())
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/click/core.py”, line 716, in call
return self.main(*args, **kwargs)
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/click/core.py”, line 696, in main
rv = self.invoke(ctx)
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/click/core.py”, line 1060, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/click/core.py”, line 1060, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/click/core.py”, line 889, in invoke
return ctx.invoke(self.callback, **ctx.params)
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/click/core.py”, line 534, in invoke
return callback(*args, **kwargs)
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/q2cli-0.0.6-py3.5.egg/q2cli/commands.py”, line 210, in call
File “”, line 2, in emp
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/qiime-2.0.6-py3.5.egg/qiime/core/callable.py”, line 227, in callable_wrapper
output_types, provenance)
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/qiime-2.0.6-py3.5.egg/qiime/core/callable.py”, line 328, in callable_executor
output_views = callable(**view_args)
File “/home/ekg43/miniconda2/envs/qiime2/lib/python3.5/site-packages/q2_demux-0.0.6-py3.5.egg/q2_demux/_demux.py”, line 149, in emp
TypeError: object of type ‘float’ has no len()