Hello,
I made the manifest for my data. unfortunately it gives me an error that I am attaching here:
There was a problem importing /galileo/home/userexternal/jdimarti/manifest_prova_mari.csv:
/galileo/home/userexternal/jdimarti/manifest_prova_mari.csv is not a(n) PairedEndFastqManifestPhred33 file:
Found header on line 1 with the following labels: ['"sample-id', 'absolute-filepath', 'direction"'], expected: ['sample-id', 'absolute-filepath', 'direction']
I read that the error of my manifest are the quotes after the direction, but unfortunately I can not in any way remove this error from my manifest.
What could it be ?
I am attaching my manifest file: manifest_prova_mari.csv (4.6 KB)
What application are you viewing the manifest file in? If you are viewing this file through applications like Microsoft Word or Excel, then these quotes will likely be hidden. I suggest when editing files for bioinformatics tools, that you always do any final editing / sanity-checking with a raw text editor, like BBEdit, Notepad, Sublime, Atom, etc..
Attached is a screen shot of your manifest file when I view it in BBEdit: