I am running the QIIME2 FMT tutorial. Now trying to answer the questions on the longitudinal aspect of the FMT tutorial, under diversity analysis.
I ran the following and obtained an error message:
$ qiime longitudinal pairwise-differences
Plugin error from longitudinal:
metric must be a valid metadata or feature table column.
Debug info has been saved to /var/folders/sv/fhp_w8c10p9dgwz2jlkdvw7rjl9c9d/T/qiime2-q2cli-err-oj262apn.log
What FeatureTable should I use to complete this plugin? How can I explore what the FeatureTable[Frequency] or the FeatureTable[Sequence] contain in a human readable format?
What is the difference between the table.qza and any of the tables created in the core-metrics folder after running the core-metrics plugin? Which one should be used to measure any of the diversities?
thanks a lot!