Longitudinal anova raw data for plots

[timanix (Timur Yergaliyev)]

Dear all!
I obtained an anova.qzv files by running qiime longitudinal anova plugin.
I want to redraw the plots for a report, but can't find a raw-data file.
In the qzv file I have:

But none of this files contains a raw-data for plots.
How can I redraw those plots?
Thank you in advance

[jwdebelius (Justine Debelius)]

Hi @timanix,

I think it might be easiest to fit the model yourself in your favorite program (R or statsmodels in python) and then get the residuals and use those to make your own plots.

Best,
Justine

[timanix (Timur Yergaliyev)]

Thanks for the reply! OK, it was my option in case if it is not possible to extract from qzv files.
New thing for me to learn

[jwdebelius (Justine Debelius)]

Hi @timanix,

I think data-viz the way you want it can be a perpetual challenge. But, you may want to look at seaborn residual plots, or the statsmodels regression results object if you’re playing with python. Ive done a few recently, and they’re fairly painless, depending on what you want.

Best,
Justine

[timanix (Timur Yergaliyev)]

Thanks again, @jwdebelius
Ended up with copying the code from longitudinal plugin and redrawing data with sns.scatterplot

[jwdebelius (Justine Debelius)]

Stealing Borrowing code always works. (Although its good if you can credit the place where you go it, even if its in your own files.)