I'm trying to upload my data into Qiime2 and I keep getting the same error "Error: No such command 'import--type' ".
Here's my code:
% qiime tools import\
The error message is due to a missing space between import and --type in your command - I've modified it below, so you can copy/paste this into your terminal and it should work as expected:
Ah, if /Users/dataone/knapweed-demux-16s is a directory containing multiple fastq files then yes - you'll need a manifest file to map each of your sample IDs to their respective fastq files. You can find instructions on creating a manifest file here.