The consensus sequence of phased primers is working fine for all 16S targets (with Greengenes, HOMD and SILVA databases) but not ITS consensus sequence (with UNITE/developer database).
I have the following error
Plugin error from feature-classifier: No matches found
Then, for ITS read extraction, I have followed “Fungal ITS analysis tutorial” at QIIME2 website and replaced lowercase characters with uppercase. Now it started extracting read-like sequences. I only see “Level 1” taxonomy in the dropdown (k__Fungi | 100.000%)?