I install qiime2 using Docker with these steps:
- Download QIIME 2 Image
docker pull qiime2/core:2018.8
- Confirm the installation
docker run -t -i -v %cd%:/data qiime2/core:2018.8 qiime
It happens that I get problem in Command Prompt that ‘qiime’ is not recognized while I was trying to go through “Moving Pictures” tutorial.
Hey there @Mirjana!
Are you running just
qiime? If so, that error makes sense - you need to run this through the
docker command, just like in step 2 you listed above. So, listing the cutadapt plugin for example would look like this:
docker run -t -i -v %cd%:/data qiime2/core:2018.8 qiime cutadapt --help
I was running just qiime. It works now thank you.
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