Hi QIIME support team,
I'm attempting to install QIIME2 on my Windows 10 machine. I installed Anaconda3, then set up conda to run in Git Bash:
echo ". ${PWD}/conda.sh" >> ~/.bashrc
Once I restarted Git Bash and activated Conda, I installed python-wget because installation of wget kept getting the following error:
$ conda install wget
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- wget
Current channels:
- https://conda.anaconda.org/conda-forge/win-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/win-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/win-64
- https://repo.anaconda.com/pkgs/r/noarch
- https://repo.anaconda.com/pkgs/msys2/win-64
- https://repo.anaconda.com/pkgs/msys2/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
Once python-wget was installed, I followed the installation instructions found in the manual:
$ python -m wget https://data.qiime2.org/distro/core/qiime2-2021.11-py38-linux-conda.yml
Saved under qiime2-2021.11-py38-linux-conda.yml
However I wasn't able to create the environment needed for qiime2:
$ conda env create -n qiime2-2021.11 --file qiime2-2021.11-py38-linux-conda.yml
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
ResolvePackageNotFound:
- bioconductor-dada2=1.18.0
- vsearch=2.7.0
- q2-quality-filter=2021.11.0
- htslib=1.14
- bioconductor-delayedarray=0.16.3
- entrez-direct=16.2
- q2-emperor=2021.11.0
- q2cli=2021.11.0
- hdmedians=0.14.2
- bioconductor-s4vectors=0.28.1
- _openmp_mutex=4.5
- q2-deblur=2021.11.0
- sortmerna=2.0
- q2-diversity=2021.11.0
- tktable=2.10
- libnghttp2=1.43.0
- bioconductor-biostrings=2.58.0
- sed=4.8
- gfortran_impl_linux-64=9.4.0
- bioconductor-iranges=2.24.1
- libgfortran-ng=11.2.0
- readline=8.1
- libedit=3.1.20191231
- perl-compress-raw-zlib=2.087
- q2-taxa=2021.11.0
- gcc_impl_linux-64=9.4.0
- libsanitizer=9.4.0
- perl-compress-raw-bzip2=2.087
- binutils_impl_linux-64=2.36.1
- perl-archive-tar=2.18
- libuuid=2.32.1
- nss=3.72
- emperor=1.0.3
- qiime2=2021.11.0
- libev=4.33
- libgcc=7.2.0
- perl-json-xs=2.34
- libgcc-ng=11.2.0
- bioconductor-genomicranges=1.42.0
- bioconductor-zlibbioc=1.36.0
- libgomp=11.2.0
- perl-carp=1.38
- libnsl=2.0.0
- libxkbcommon=1.0.3
- q2-mystery-stew=2021.11.0
- blast=2.12.0
- libstdcxx-ng=11.2.0
- ncurses=6.2
- dnaio=0.6.0
- libgfortran5=11.2.0
- q2-phylogeny=2021.11.0
- perl-pathtools=3.75
- gxx_impl_linux-64=9.4.0
- perl-list-moreutils=0.413
- q2-dada2=2021.11.0
- q2-quality-control=2021.11.0
- perl-threaded=5.26.0
- q2-diversity-lib=2021.11.0
- q2-metadata=2021.11.0
- samtools=1.14
- pbzip2=1.1.13
- bioconductor-xvector=0.30.0
- q2-cutadapt=2021.11.0
- q2-alignment=2021.11.0
- perl-types-serialiser=1.0
- gfortran_linux-64=9.4.0
- q2templates=2021.11.0
- q2-fragment-insertion=2021.11.0
- nspr=4.32
- perl-io-compress=2.087
- dbus=1.13.6
- q2-gneiss=2021.11.0
- bioconductor-biocparallel=1.24.1
- perl-io-zlib=1.10
- alsa-lib=1.2.3
- raxml=8.2.12
- q2-types=2021.11.0
- bioconductor-rhtslib=1.22.0
- q2-vsearch=2021.11.0
- q2-sample-classifier=2021.11.0
- perl-common-sense=3.74
- binutils_linux-64=2.36
- q2-composition=2021.11.0
- gxx_linux-64=9.4.0
- ld_impl_linux-64=2.36.1
- hmmer=3.1b2
- q2-longitudinal=2021.11.0
- cutadapt=3.5
- q2-feature-classifier=2021.11.0
- q2galaxy=2021.11.0
- libgcc-devel_linux-64=9.4.0
- perl-scalar-list-utils=1.52
- bioconductor-shortread=1.48.0
- q2-feature-table=2021.11.0
- fasttree=2.1.10
- bioconductor-genomicalignments=1.26.0
- mafft=7.490
- unifrac=0.20.2
- bowtie2=2.4.2
- q2-demux=2021.11.0
- perl-json=4.02
- iqtree=2.1.4_beta
- gcc_linux-64=9.4.0
- scikit-bio=0.5.6
- sepp=4.3.10
- bioconductor-biobase=2.50.0
- bioconductor-rsamtools=2.6.0
- libstdcxx-devel_linux-64=9.4.0
- perl-exporter-tiny=1.002001
I perused past topics that had similar installation problems, but they were for older versions or different machines, so I wasn't sure if my problem is unique. Any kind of help would be appreciated!
Ps. I also ran conda info for more information about the conda installation:
$ conda info
active environment : base
active env location : C:\Anaconda3
shell level : 1
user config file : C:\Users\273328C\.condarc
populated config files : C:\Users\273328C.condarc
conda version : 4.11.0
conda-build version : 3.21.6
python version : 3.9.7.final.0
virtual packages : __win=0=0
__archspec=1=x86_64
base environment : C:\Anaconda3 (writable)
conda av data dir : C:\Anaconda3\etc\conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/win-64
https://conda.anaconda.org/conda-forge/noarch
https://repo.anaconda.com/pkgs/main/win-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/win-64
https://repo.anaconda.com/pkgs/r/noarch
https://repo.anaconda.com/pkgs/msys2/win-64
https://repo.anaconda.com/pkgs/msys2/noarch
package cache : C:\Anaconda3\pkgs
C:\Users\273328C.conda\pkgs
C:\Users\273328C\AppData\Local\conda\conda\pkgs
envs directories : C:\Anaconda3\envs
C:\Users\273328C.conda\envs
C:\Users\273328C\AppData\Local\conda\conda\envs
platform : win-64
user-agent : conda/4.11.0 requests/2.26.0 CPython/3.9.7 Windows/10 Windows/10.0.19042
administrator : False
netrc file : None
offline mode : False