Is there anything similar to for QIIME2?

Hi! I’ve analysed the same data in a few different ways and I’ve generated pcoa plots for each method. I’m just trying to see if there’s any way I can compare the pcoa plots, or if there is a way I can combine the data matrices for each plot and run something similar to on qiime2?

Yes, the analogous is to use these two commands:

qiime diversity procrustes-analysis ...
qiime emperor procrustes-plot ...

Also, in QIIME2 I would use Mantel’s test between the two originating distance matrices to asses the fit between the distances. To do this you would use qiime diversity mantel.


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