Hey everyone, new to Qiime and microbiome studies here!
This seems to be a dumb question but I couldn’t find any answer anywhere so figured it might be worth posting to ask: if there a plugin/command that could calculate how many percentage of features in sample A are present in sample B? Basically I’m looking at a simple diversity metric that only takes presence/absence into account, for example how many % of an inoculum sticked in a gnotobiotic mouse.
I’ve looked into the moving-window tutorial as well as some community posts, for example this one: Alpha and Beta Diversity Explanations and Commands, but all the metrics seem to deal with more than what I need…
Thanks in advance for your help! (Or please point me to the right post if my searching skills have been terrible :X)