I’m very new to Qiime2 and any sort of bioinformatics work so I apologize in advance for my lack of understanding.
I’m using Qiime2 to look at diversity of Fungi in environmental DNA samples I’ve processed.
I’ve followed the Moving Picture Tutorials and created feature tables of my data and even used the taxa collapse option to generate a table containing my taxa in column one, and the reads per sample in all other columns.
I exported both tables (as .txt files) hoping to run them in FUNGuild but the files don’t match the required FUNGuild OTU table format (http://www.stbates.org/guilds/download_examples.php/?download_file=otu_table_example.txt). I couldn’t find anything online that helped with my issue so I got to thinking… is the Qiime2 feature table compatible with FUNGuild?
I’ve found papers that used Qiime OTU tables for their input into FUNGuild, but none mentioning Qiime2.