Is it possible to generate seqs.fna file using qiime 2 ?

[M_F (Meriem)]

Hello,

I write to you wondering to know if it's possible to generate seqs.fna output using qiime 2. If yes, could you send to me the command ?

Thanks

[yanxianl (Yanxian Li)]

Hi,

I am not sure what you need based on your question, bu I guess you may want to export your representative sequences? If so, you can use the qiime export tool. For example:

qiime tools export
--input-path rep-seqs.qza
--output-path rep-seqs

In the output directory rep-seqs, you will find a file named dna-sequences.fasta. You can rename it to dna-sequences.fna.

[M_F (Meriem)]

Hi @yanxianl

Thanks for your help. This is the information that i need.