Is it possible to generate seqs.fna file using qiime 2 ?


I write to you wondering to know if it's possible to generate seqs.fna output using qiime 2. If yes, could you send to me the command ?



I am not sure what you need based on your question, bu I guess you may want to export your representative sequences? If so, you can use the qiime export tool. For example:

qiime tools export
--input-path rep-seqs.qza
--output-path rep-seqs

In the output directory rep-seqs, you will find a file named dna-sequences.fasta. You can rename it to dna-sequences.fna.


Hi @yanxianl

Thanks for your help. This is the information that i need.

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