installing Qiime2 with mamba

In my experience, such an error occurs due to dependency mismatch caused by installing apps from wrong channels in conda.
Try to add bioconda and conda-forge to default channels via:

conda config --add channels bioconda
conda config --add channels conda-forge

OR

add a channel specification in qiime2-2021.11-py38-linux-conda.yml:

channels:
- defaults
- conda-forge
- bioconda

Tested QIIME2 2021.11 installation 5h ago on a fresh VM via mamba. All worked smoothly by me without need to modify anything.

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