Installing Qiime2-r

Library Plugin Support
1

Hi @jbisanz could you help me with these error messages when trying to install QIIME2 R :

The downloaded binary packages are in
C:\Users\annik\AppData\Local\Temp\RtmpYDWoRY\downloaded_packages
√ checking for file 'C:\Users\annik\AppData\Local\Temp\RtmpYDWoRY\remotes44b8100175e9\jbisanz-qiime2R-2a3cee1/DESCRIPTION' (628ms)

  • preparing 'qiime2R':
    √ checking DESCRIPTION meta-information ...
  • checking for LF line-endings in source and make files and shell scripts
  • checking for empty or unneeded directories
    Omitted 'LazyData' from DESCRIPTION
  • building 'qiime2R_0.99.6.tar.gz'

Installing package into ‘C:/Users/annik/OneDrive - Colostate/Documents/R/win-library/4.1’
(as ‘lib’ is unspecified)

  • installing source package 'qiime2R' ...
    ** using staged installation
    ** R
    ** inst
    ** byte-compile and prepare package for lazy loading
    Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
    namespace 'rlang' 1.0.0 is already loaded, but >= 1.0.2 is required
    Calls: ... asNamespace -> loadNamespace -> namespaceImport -> loadNamespace
    Execution halted
    ERROR: lazy loading failed for package 'qiime2R'
  • removing 'C:/Users/annik/OneDrive - Colostate/Documents/R/win-library/4.1/qiime2R'
    Warning messages:
    1: In file.copy(savedcopy, lib, recursive = TRUE) :
    problem copying C:\Users\annik\OneDrive - Colostate\Documents\R\win-library\4.1\00LOCK\rlang\libs\x64\rlang.dll to C:\Users\annik\OneDrive - Colostate\Documents\R\win-library\4.1\rlang\libs\x64\rlang.dll: Permission denied
    2: In file.copy(savedcopy, lib, recursive = TRUE) :
    problem copying C:\Users\annik\OneDrive - Colostate\Documents\R\win-library\4.1\00LOCK\glue\libs\x64\glue.dll to C:\Users\annik\OneDrive - Colostate\Documents\R\win-library\4.1\glue\libs\x64\glue.dll: Permission denied
    3: In file.copy(savedcopy, lib, recursive = TRUE) :
    problem copying C:\Users\annik\OneDrive - Colostate\Documents\R\win-library\4.1\00LOCK\cli\libs\x64\cli.dll to C:\Users\annik\OneDrive - Colostate\Documents\R\win-library\4.1\cli\libs\x64\cli.dll: Permission denied
    4: In file.copy(savedcopy, lib, recursive = TRUE) :
    problem copying C:\Users\annik\OneDrive - Colostate\Documents\R\win-library\4.1\00LOCK\magrittr\libs\x64\magrittr.dll to C:\Users\annik\OneDrive - Colostate\Documents\R\win-library\4.1\magrittr\libs\x64\magrittr.dll: Permission denied
    5: In i.p(...) :
    installation of package ‘C:/Users/annik/AppData/Local/Temp/RtmpYDWoRY/file44b83a58271a/qiime2R_0.99.6.tar.gz’ had non-zero exit status

Thank you! I think it is an issue with my OneDrive account, but I am not sure how to get around this.

2

Hello Annika,

Welcome to the forums! :qiime2:

As far as I can tell, you are installing these packages into a OneDrive folder... is that correct?

My guess is that the automatic sync functions of OneDrive are interfering with the R install. It's best to install software to a folder only on that computer, and use OneDrive to sync and share input data and output results, not all the temporary files and installed libraries needed by R.

2 Likes
3

Thank you @colinbrislawn that worked. I deletes R and reinstalled it out of OneDrive and used the local R as the default for package installations and it works now!

Thank you!

1 Like