Please note I have signed up to your online course in January and so am trying to get everything installed before then, and have run into an issue with installation (see below for details).
I apologise if I have missed something simple - I am new to this. I am trying to install the command line version but also want to know if I should install the studio version too - ready for the course.
Thanks you - your help is much appreciated.
Emma.
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Have you searched for the problem on the forum? It is rare that we see a new question asked, so make sure you do your homework before asking for us to commit our time to helping you.
YES - I have to confess, I am new to this and so don't particularly understand the responses - sorry! I am using a windows machine and have installed miniconda3, but it seems to fail at the installation step. I have seen you have recommended WSL to someone else - but they didn't say if this had worked so wanted to check. -
Have you reviewed the QIIME 2 Forum Glossary?
YES -
Version of QIIME 2 you are running, and how it is installed (e.g. Virtualbox, conda, etc.)
NONE yet - trying to do that via miniconda3 on a windows machine -
What is the exact command or commands you ran? Copy and paste please.
conda env create -n qiime2-2020.11 --file qiime2-2020.11-py36-linux-conda.yml --verbose -
What is the exact error message? If you didn't run the command with the
--verboseflag, please re-run and copy-and-paste the results.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
Traceback (most recent call last):
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\exceptions.py", line 1079, in call
return func(*args, **kwargs)
File "C:\ProgramData\Miniconda3\lib\site-packages\conda_env\cli\main.py", line 80, in do_call
exit_code = getattr(module, func_name)(args, parser)
File "C:\ProgramData\Miniconda3\lib\site-packages\conda_env\cli\main_create.py", line 118, in execute
result[installer_type] = installer.install(prefix, pkg_specs, args, env)
File "C:\ProgramData\Miniconda3\lib\site-packages\conda_env\installers\conda.py", line 31, in install
unlink_link_transaction = solver.solve_for_transaction(
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\core\solve.py", line 114, in solve_for_transaction
unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\core\solve.py", line 157, in solve_for_diff
final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\core\solve.py", line 275, in solve_final_state
ssc = self._add_specs(ssc)
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\core\solve.py", line 565, in _add_specs
explicit_pool = ssc.r._get_package_pool(self.specs_to_add)
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\resolve.py", line 555, in _get_package_pool
pool = self.get_reduced_index(specs)
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\common\io.py", line 88, in decorated
return f(*args, **kwds)
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\resolve.py", line 576, in get_reduced_index
explicit_specs, features = self.verify_specs(explicit_specs)
File "C:\ProgramData\Miniconda3\lib\site-packages\conda\resolve.py", line 288, in verify_specs
raise ResolvePackageNotFound(bad_deps)
conda.exceptions.ResolvePackageNotFound:- perl-business-isbn-data=20140910.003
- q2-deblur=2020.11.1
- perl-www-robotrules=6.02
- perl-http-cookies=6.04
- perl-http-daemon=6.01
- q2-cutadapt=2020.11.1
- tktable=2.10
- bioconductor-rhtslib=1.22.0
- sed=4.8
- perl-carp=1.38
- q2-phylogeny=2020.11.1
- perl-xml-namespacesupport=1.12
- perl-app-cpanminus=1.7044
- libgomp=9.3.0
- perl-types-serialiser=1.0
- q2-alignment=2020.11.1
- perl-mime-base64=3.15
- perl-json-xs=2.34
- q2-quality-filter=2020.11.1
- libnghttp2=1.41.0
- perl-compress-raw-bzip2=2.087
- arb-bio-tools=6.0.6
- scikit-bio=0.5.6
- vsearch=2.7.0
- qiime2=2020.11.1
- perl-constant=1.33
- q2-diversity-lib=2020.11.1
- libedit=3.1.20191231
- bioconductor-biostrings=2.58.0
- q2templates=2020.11.1
- bioconductor-s4vectors=0.28.0
- htslib=1.11
- perl-xml-sax-base=1.09
- perl-digest-md5=2.55
- bioconductor-rsamtools=2.6.0
- cutadapt=3.1
- perl-io-compress=2.087
- perl-file-listing=6.04
- alsa-lib=1.2.3
- entrez-direct=13.9
- perl-html-tagset=3.20
- q2-dada2=2020.11.1
- perl-time-local=1.28
- q2-sample-classifier=2020.11.1
- q2-metadata=2020.11.1
- perl-lwp-mediatypes=6.04
- libgfortran-ng=7.5.0
- q2-demux=2020.11.1
- mafft=7.475
- hdmedians=0.14.1
- gfortran_impl_linux-64=7.5.0
- q2-types=2020.11.1
- perl-lwp-protocol-https=6.07
- q2cli=2020.11.1
- bowtie2=2.4.2
- ncurses=6.2
- perl-http-negotiate=6.01
- sortmerna=2.0
- perl-exporter=5.72
- perl-try-tiny=0.30
- bioconductor-dada2=1.18.0
- perl-base=2.23
- perl-xsloader=0.24
- perl-compress-raw-zlib=2.087
- perl-business-isbn=3.004
- perl-uri=1.76
- q2-gneiss=2020.11.1
- perl-xml-sax-expat=0.51
- perl-common-sense=3.74
- perl-test-requiresinternet=0.05
- perl-storable=3.15
- libuuid=2.32.1
- sepp=4.3.10
- sina=1.7.1
- iqtree=2.0.3
- bioconductor-genomicalignments=1.26.0
- q2-feature-classifier=2020.11.1
- gcc_linux-64=7.5.0
- bioconductor-genomicranges=1.42.0
- perl-file-temp=0.2304
- perl-io-html=1.001
- perl-xml-simple=2.25
- perl-extutils-makemaker=7.36
- q2-longitudinal=2020.11.1
- bwidget=1.9.14
- perl-net-ssleay=1.88
- raxml=8.2.12
- binutils_linux-64=2.35
- perl-xml-parser=2.44_01
- q2-vsearch=2020.11.1
- perl-file-path=2.16
- q2-quality-control=2020.11.1
- unifrac=0.20.1
- bioconductor-shortread=1.48.0
- libstdcxx-ng=9.3.0
- perl-parent=0.236
- emperor=1.0.1
- libgcc=7.2.0
- isa-l=2.30.0
- gxx_impl_linux-64=7.5.0
- perl-archive-tar=2.32
- bioconductor-biobase=2.50.0
- perl-ntlm=1.09
- libgcc-ng=9.3.0
- perl-http-date=6.02
- bioconductor-iranges=2.24.0
- perl-io-socket-ssl=2.066
- bioconductor-xvector=0.30.0
- binutils_impl_linux-64=2.35.1
- perl-digest-hmac=1.03
- perl-json=4.02
- hmmer=3.1b2
- perl-html-parser=3.72
- perl-exporter-tiny=1.002001
- bioconductor-biocparallel=1.24.0
- _openmp_mutex=4.5
- fasttree=2.1.10
- q2-composition=2020.11.1
- perl-socket=2.027
- bioconductor-zlibbioc=1.36.0
- gxx_linux-64=7.5.0
- libgfortran4=7.5.0
- q2-emperor=2020.11.1
- perl-http-message=6.18
- libdeflate=1.6
- perl-data-dumper=2.173
- perl-pathtools=3.75
- q2-feature-table=2020.11.1
- libarbdb=6.0.6
- ld_impl_linux-64=2.35.1
- perl-encode-locale=1.05
- readline=8.0
- gcc_impl_linux-64=7.5.0
- perl-encode=2.88
- perl-list-moreutils-xs=0.428
- q2-taxa=2020.11.1
- dnaio=0.4.4
- blast=2.10.1
- libev=4.33
- perl-scalar-list-utils=1.52
- perl-list-moreutils=0.428
- perl-io-zlib=1.10
- perl-html-tree=5.07
- samtools=1.11
- q2-diversity=2020.11.1
- bioconductor-delayedarray=0.16.0
- q2-fragment-insertion=2020.11.1
- perl-mozilla-ca=20180117
- gfortran_linux-64=7.5.0