Importing Qiime2 biom file with taxonomy to phyloseq

[jairideout (Jai Ram Rideout)]

Hi @leila! Can you please try out the instructions in this forum topic? Let us know how it goes!

Is there any way to summarize taxa plot by category?

Hi @m-ocejo! We currently don’t have that functionality in QIIME 2’s taxa barplots. I created an issue to track the addition of that feature. Note that you can sort the samples by a metadata category, so that samples from the same category will be grouped together (but each bar will still represent a single sample). If you’re interested in using QIIME 1 to produce these grouped barplots, you can export your BIOM table and taxonomy data from your .qza files. In order to use summarize_taxa_throug…