wow we both had the same idea
No this was my fault, I didn't look up what we needed to name the columns in the manifest. Ben
at least it started to read files now. That is a progress
we did it. it started running but there was a bugFile "//miniconda3/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/io/registry.py", line 506, in read
return (x for x in itertools.chain([next(gen)], gen))
File "//miniconda3/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/io/registry.py", line 531, in _read_gen
yield from reader(file, **kwargs)
File "//miniconda3/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/io/registry.py", line 1008, in wrapped_reader
yield from reader_function(fhs[-1], **kwargs)
File "//miniconda3/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/io/format/fastq.py", line 354, in _fastq_to_generator
qual_header)
File "//miniconda3/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/io/format/fastq.py", line 523, in _parse_quality_scores
phred_offset=phred_offset))
File "//miniconda3/envs/qiime2-2019.7/lib/python3.6/site-packages/skbio/io/format/_base.py", line 35, in _decode_qual_to_phred
% (phred_range[0], phred_range[1]))
ValueError: Decoded Phred score is out of range [0, 62].
An unexpected error has occurred:
Decoded Phred score is out of range [0, 62].
See above for debug info.
That, you're going to have to dig around a bit, I have a procedure to do tomorrow AM so I must sleep. Ben
thanks a lot for your help. At least we imported the file. I will do the search