Firstly, is this metagenomic data? If so, I’m not sure how useful QIIME 2 will be for you at this point in time.
It looks to me like you need more information about the protocol used in order to import this data correctly. In this case, you may need to contact the authors or find the original paper.
For example, one question I have is if the forward and reverse reads are interlaced into a single fastq file. The entry says that this is paired-end data. However, since it’s not in CASVA 1.8 format (there aren’t separate files for forward and reverse reads), I can’t tell just by looking how to import the data.