Importing data from ion-torrent run


I only started working on QIIME2 recently and have a question regarding importing data in to QIIME 2. I used to work on Qiime and I find it very difficult to do that in Qiime2.

I ran 96 samples with both 16s and ITS primers. I got a single fastq file from the sequencing provider and would like some advise to import the data.

Kindly advise.


Hi Manoj,

I recently had a similar problem. My solution is below:

Hope this helps


depending on where the barcodes are, it sounds like you should follow this tutorial.

Good luck!

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