I’m currently trying to import some demultiplexed single end reads using qiime tools import. However, I’m getting the following error:
There was a problem importing Chpt_4_R1_fastq:
Chpt_4_R1_fastq/SID2R19-141220_S193_L001_R1_001.fastq.gz is not a(n) FastqGzFormat file:
File is uncompressed
Since the file is in a fastq.gz format i’m at a loss as to what the import is having an issue with. I’m using qiime2-2020.11 with conda in mac terminal.
Below is the input code
qiime tools import --type ‘SampleData[SequencesWithQuality]’ --input-path Chpt_4_R1_fastq --input-format CasavaOneEightSingleLanePerSampleDirFmt --output-path demux-single-end.qza
Thank you in advance!