Import from multiple GaIIx lanes

Casava is only used for files in that specific naming format. Use the manifest formats instead (see the importing tutorial for more information).

No — as long as it is fastq data it should work, and the manifest format is flexible for naming conventions (because you point to each individual file in a "manifest file").

Let us know if/why the manifest format is not working for you and we can help!

I hope that helps!

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