Continuing the discussion from Import Paired End Illumina Data:
I have paired-end, demultiplexed data from Illumina GaIIx sequencing. Similar to above, the samples are spread across multiple lanes, and I plan to create a FeatureTable of each lane and then merge. However, I am unsure of how to import the data, as the file structure and name are not like the tutorials.
File structure and name: each lane file contains a separate file for each sample. Each sample file contains with file names similar to: s_2_1_sequence.txt, and the same file name is present for each sample (sample a bin 1 and sample b bin 2 have the same named files with presumably different info). I would also really rather not rename all of these files by hand.
- What is the best way for me to import these files? (Casava?)
- Do I need to rename or restructure this data?