Thanks for catching that documentation bug , @sbslee!
And sorry! That must have been frustrating. We undertook a major reorganization of q2-diversity
during the last two release cycles (2020.6, 2020.8), during which alpha
, beta
, and their phylogenetic counterparts were refactored as pipelines. This failure to update the docs slipped through.
If you run into this again, here's a trick. In QIIME 2, there are three types of Actions: Methods, Pipelines, and Visualizers. (They all subclass Action, if you're familiar with object-oriented programming concepts).
If you're not sure which type of Action the command you want is, the API should let you use the more-general <plugin>.action.<command>
syntax in place of, say, <plugin>.methods.<command>
. @Nicholas_Bokulich's example above does exactly that:
If you're using tab-complete, it's usually easier to find what you're looking for if you use the right type:
... but you'll notice that alpha
shows up alongside everything else in the complete list of Actions:
Thanks again for calling this to our attention! I'll fix it ASAP.
Chris
EDIT: This issue will be fixed here.