Illegal Instruction on install of qiime2-2022.8

williamshell · October 21, 2022, 4:54am

I have faced the similar problem as described by Illegal Instruction on on install of qiime2-2022.8. I installed qiime2 v2022.2 (it works well) and v2022.8 on native Ubuntu 22.04. Folllowing your suggestion, I uploaded the more_info.txt file. Please help me. I am looking forward to your reply.

I also followed this https://forum.qiime2.org/t/illegal-instruction-error-when-i-use-qiime-help/2606/7. Here are the output from steps 2 and 3.

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Reading symbols from python...
Starting program: /root/miniconda3/envs/qiime2-2022.8/bin/python -c import\ qiime2.sdk;\ qiime2.sdk.PluginManager();
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1".
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Thread 1 "python" received signal SIGILL, Illegal instruction.
0x00007ffe59ae8197 in __sti___8_biom_cpp_b3a46038 () from /root/miniconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/unifrac/../../../libssu.so

#0 0x00007ffe59ae8197 in __sti___8_biom_cpp_b3a46038 () from /root/miniconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/unifrac/../../../libssu.so
#1 0x00007ffff7fcbfbe in call_init (l=, [email protected]=3, [email protected]=0x7fffffffc028, [email protected]=0x555555e9eeb0) at ./elf/dl-init.c:70
#2 0x00007ffff7fcc0a8 in call_init (env=0x555555e9eeb0, argv=0x7fffffffc028, argc=3, l=) at ./elf/dl-init.c:33
#3 _dl_init (main_map=0x555557df9d20, argc=3, argv=0x7fffffffc028, env=0x555555e9eeb0) at ./elf/dl-init.c:117
#4 0x00007ffff7d6d7f4 in __GI__dl_catch_exception (exception=, operate=, args=) at ./elf/dl-error-skeleton.c:182
#5 0x00007ffff7fd2e96 in dl_open_worker (a=0x7fffffff60d0) at ./elf/dl-open.c:808
#6 dl_open_worker ([email protected]=0x7fffffff60d0) at ./elf/dl-open.c:771
#7 0x00007ffff7d6d79a in __GI__dl_catch_exception (exception=, operate=, args=) at ./elf/dl-error-skeleton.c:208
#8 0x00007ffff7fd320c in _dl_open (file=0x7ffff2f9bdd0 "/root/miniconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/unifrac/_api.cpython-38-x86_64-linux-gnu.so", mode=,
caller_dlopen=0x55555574c4d7 <_PyImport_FindSharedFuncptr+135>, nsid=, argc=3, argv=0x7fffffffc028, env=0x555555e9eeb0) at ./elf/dl-open.c:886
#9 0x00007ffff7c8be6c in dlopen_doit ([email protected]=0x7fffffff6340) at ./dlfcn/dlopen.c:56
#10 0x00007ffff7d6d79a in __GI__dl_catch_exception ([email protected]=0x7fffffff62a0, operate=, args=) at ./elf/dl-error-skeleton.c:208
#11 0x00007ffff7d6d853 in __GI__dl_catch_error (objname=0x7fffffff62f8, errstring=0x7fffffff6300, mallocedp=0x7fffffff62f7, operate=, args=) at ./elf/dl-error-skeleton.c:227
#12 0x00007ffff7c8b93f in _dlerror_run ([email protected]=0x7ffff7c8be10 <dlopen_doit>, [email protected]=0x7fffffff6340) at ./dlfcn/dlerror.c:138
#13 0x00007ffff7c8bf21 in dlopen_implementation (dl_caller=, mode=, file=) at ./dlfcn/dlopen.c:71
#14 ___dlopen (file=, mode=) at ./dlfcn/dlopen.c:81
#15 0x000055555574c4d7 in _PyImport_FindSharedFuncptr (prefix=0x5555557b6cb8 "PyInit", shortname=0x7ffff2f7a5c0 "_api",
pathname=0x7ffff2f9bdd0 "/root/miniconda3/envs/qiime2-2022.8/lib/python3.8/site-packages/unifrac/_api.cpython-38-x86_64-linux-gnu.so", fp=0x0) at /usr/local/src/conda/python-3.8.13/Python/dynload_shlib.c:99
#16 0x000055555574c026 in _PyImport_LoadDynamicModuleWithSpec (spec=0x7ffff2f94e80, fp=0x0) at /usr/local/src/conda/python-3.8.13/Python/importdl.c:134
#17 0x000055555574be64 in _imp_create_dynamic_impl (module=, file=, spec=0x7ffff2f94e80) at /usr/local/src/conda/python-3.8.13/Python/import.c:2221
#18 _imp_create_dynamic (module=, args=, nargs=) at /usr/local/src/conda/python-3.8.13/Python/clinic/import.c.h:330
#19 0x0000555555680f88 in cfunction_vectorcall_FASTCALL ([email protected]=0x7ffff7e58540, args=0x7ffff3535dd8, [email protected]=1, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/methodobject.c:426
#20 0x00005555556900bf in PyVectorcall_Call (callable=0x7ffff7e58540, tuple=, kwargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:200
#21 0x0000555555674d2e in do_call_core (kwdict=0x7ffff34c6f40, callargs=0x7ffff3535dc0, func=0x7ffff7e58540, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4983
#22 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3559
#23 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e646f0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#24 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x7ffe5ba6b560, kwcount=, kwstep=1, defs=0x0, defcount=0,
kwdefs=0x0, closure=0x0, name=0x7ffff7e46440, qualname=0x7ffff7e46440) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#25 0x000055555568033c in _PyFunction_Vectorcall (func=, stack=0x7ffe5ba6b550, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#26 0x0000555555673ffc in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7ffe5ba6b550, callable=0x7ffff7e57550) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#27 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#28 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3469
#29 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x7ffe5ba6b3c0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#30 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#31 _PyFunction_Vectorcall (func=, stack=0x7ffe5ba38f40, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#32 0x000055555566fd9d in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7ffe5ba38f40, callable=0x7ffff7bef940) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#33 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#34 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3486
#35 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x7ffe5ba38dc0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#36 function_code_fastcall (globals=, nargs=1, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#37 _PyFunction_Vectorcall (func=, stack=0x555557e7ab10, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#38 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e7ab10, callable=0x7ffff7e57ee0) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#39 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#40 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#41 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e7a990) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#42 function_code_fastcall (globals=, nargs=1, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#43 _PyFunction_Vectorcall (func=, stack=0x555557e5f1a0, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#44 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e5f1a0, callable=0x7ffff7e59160) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
--Type for more, q to quit, c to continue without paging--
#45 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#46 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#47 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e5eff0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#48 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#49 _PyFunction_Vectorcall (func=, stack=0x555557dfbf38, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#50 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557dfbf38, callable=0x7ffff7e5c3a0) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#51 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#52 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#53 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557dfbda0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#54 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#55 _PyFunction_Vectorcall (func=, stack=0x7fffffff70d0, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#56 0x000055555567fb9e in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7fffffff70d0, callable=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#57 _PyObject_FastCall (nargs=, args=0x7fffffff70d0, func=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:147
#58 object_vacall (base=0x7fffffff70d0, callable=0x7ffff7e5c430, vargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1187
#59 0x0000555555691c76 in _PyObject_CallMethodIdObjArgs (obj=0x7ffff7e50cc0, name=0x5555558ace60 <PyId__find_and_load.7>) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1245
#60 0x0000555555691173 in import_find_and_load (abs_name=0x7ffff34c6ef0) at /usr/local/src/conda/python-3.8.13/Python/import.c:1698
#61 PyImport_ImportModuleLevelObject (name=0x7ffff34c6ef0, globals=, locals=, fromlist=0x7ffff34fa900, level=0) at /usr/local/src/conda/python-3.8.13/Python/import.c:1798
#62 0x0000555555673174 in import_name (level=0x5555558dece0 <small_ints+160>, fromlist=0x7ffff34fa900, name=0x7ffff34c6ef0, f=0x555557e5abd0, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:5139
#63 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:2993
#64 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e5abd0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#65 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x0, kwcount=, kwstep=2, defs=0x0, defcount=0, kwdefs=0x0,
closure=0x0, name=0x0, qualname=0x0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#66 0x000055555572dde9 in PyEval_EvalCodeEx (_co=, globals=, locals=, args=, argcount=, kws=, kwcount=0, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0)
at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4327
#67 0x000055555572ddab in PyEval_EvalCode ([email protected]=0x7ffff34bf450, [email protected]=0x7ffff355e2c0, [email protected]=0x7ffff355e2c0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:718
#68 0x000055555573211d in builtin_exec_impl (module=, locals=0x7ffff355e2c0, globals=0x7ffff355e2c0, source=0x7ffff34bf450) at /usr/local/src/conda/python-3.8.13/Python/bltinmodule.c:1025
#69 builtin_exec (module=, args=, nargs=) at /usr/local/src/conda/python-3.8.13/Python/clinic/bltinmodule.c.h:396
#70 0x0000555555680f88 in cfunction_vectorcall_FASTCALL ([email protected]=0x7ffff7e3d590, args=0x7ffff34c6918, [email protected]=2, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/methodobject.c:426
#71 0x00005555556900bf in PyVectorcall_Call (callable=0x7ffff7e3d590, tuple=, kwargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:200
#72 0x0000555555674d2e in do_call_core (kwdict=0x7ffff355e8c0, callargs=0x7ffff34c6900, func=0x7ffff7e3d590, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4983
#73 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3559
#74 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e57a40) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#75 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x555557de1738, kwcount=, kwstep=1, defs=0x0, defcount=0,
kwdefs=0x0, closure=0x0, name=0x7ffff7e46440, qualname=0x7ffff7e46440) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#76 0x000055555568033c in _PyFunction_Vectorcall (func=, stack=0x555557de1720, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#77 0x0000555555673ffc in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557de1720, callable=0x7ffff7e57550) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#78 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#79 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3469
#80 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557de1590) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#81 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#82 _PyFunction_Vectorcall (func=, stack=0x555557de83c0, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#83 0x000055555566fd9d in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557de83c0, callable=0x7ffff7bed790) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#84 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#85 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3486
#86 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557de8240) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#87 function_code_fastcall (globals=, nargs=1, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#88 _PyFunction_Vectorcall (func=, stack=0x555557de9c10, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#89 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557de9c10, callable=0x7ffff7e59160) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
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#90 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#91 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#92 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557de9a60) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#93 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#94 _PyFunction_Vectorcall (func=, stack=0x555557e6f7c8, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#95 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e6f7c8, callable=0x7ffff7e5c3a0) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#96 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#97 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#98 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e6f630) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#99 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#100 _PyFunction_Vectorcall (func=, stack=0x7fffffff7e40, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#101 0x000055555567fb9e in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7fffffff7e40, callable=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#102 _PyObject_FastCall (nargs=, args=0x7fffffff7e40, func=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:147
#103 object_vacall (base=0x7fffffff7e40, callable=0x7ffff7e5c430, vargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1187
#104 0x0000555555691c76 in _PyObject_CallMethodIdObjArgs (obj=0x7ffff7e50cc0, name=0x5555558ace60 <PyId__find_and_load.7>) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1245
#105 0x0000555555691173 in import_find_and_load (abs_name=0x7ffff34c6c70) at /usr/local/src/conda/python-3.8.13/Python/import.c:1698
#106 PyImport_ImportModuleLevelObject (name=0x7ffff34c6c70, globals=, locals=, fromlist=0x5555558b4d60 <_Py_NoneStruct>, level=0) at /usr/local/src/conda/python-3.8.13/Python/import.c:1798
#107 0x0000555555673174 in import_name (level=0x5555558dece0 <small_ints+160>, fromlist=0x5555558b4d60 <_Py_NoneStruct>, name=0x7ffff34c6c70, f=0x555557e6d680, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:5139
#108 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:2993
#109 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e6d680) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#110 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x0, kwcount=, kwstep=2, defs=0x0, defcount=0, kwdefs=0x0,
closure=0x0, name=0x0, qualname=0x0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#111 0x000055555572dde9 in PyEval_EvalCodeEx (_co=, globals=, locals=, args=, argcount=, kws=, kwcount=0, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0)
at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4327
#112 0x000055555572ddab in PyEval_EvalCode ([email protected]=0x7ffff34f4660, [email protected]=0x7ffff3563d00, [email protected]=0x7ffff3563d00) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:718
#113 0x000055555573211d in builtin_exec_impl (module=, locals=0x7ffff3563d00, globals=0x7ffff3563d00, source=0x7ffff34f4660) at /usr/local/src/conda/python-3.8.13/Python/bltinmodule.c:1025
#114 builtin_exec (module=, args=, nargs=) at /usr/local/src/conda/python-3.8.13/Python/clinic/bltinmodule.c.h:396
#115 0x0000555555680f88 in cfunction_vectorcall_FASTCALL ([email protected]=0x7ffff7e3d590, args=0x7ffff35380d8, [email protected]=2, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/methodobject.c:426
#116 0x00005555556900bf in PyVectorcall_Call (callable=0x7ffff7e3d590, tuple=, kwargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:200
#117 0x0000555555674d2e in do_call_core (kwdict=0x7ffff35551c0, callargs=0x7ffff35380c0, func=0x7ffff7e3d590, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4983
#118 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3559
#119 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e5b0b0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#120 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x555557e33ef8, kwcount=, kwstep=1, defs=0x0, defcount=0,
kwdefs=0x0, closure=0x0, name=0x7ffff7e46440, qualname=0x7ffff7e46440) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#121 0x000055555568033c in _PyFunction_Vectorcall (func=, stack=0x555557e33ee0, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#122 0x0000555555673ffc in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e33ee0, callable=0x7ffff7e57550) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#123 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#124 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3469
#125 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e33d50) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#126 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#127 _PyFunction_Vectorcall (func=, stack=0x555557e7fd30, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#128 0x000055555566fd9d in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e7fd30, callable=0x7ffff7bed790) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#129 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#130 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3486
#131 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e7fbb0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#132 function_code_fastcall (globals=, nargs=1, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#133 _PyFunction_Vectorcall (func=, stack=0x555557e64d40, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#134 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e64d40, callable=0x7ffff7e59160) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
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#135 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#136 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#137 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e64b90) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#138 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#139 _PyFunction_Vectorcall (func=, stack=0x555557de6e48, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#140 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557de6e48, callable=0x7ffff7e5c3a0) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#141 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#142 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#143 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557de6cb0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#144 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#145 _PyFunction_Vectorcall (func=, stack=0x7fffffff8bb0, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#146 0x000055555567fb9e in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7fffffff8bb0, callable=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#147 _PyObject_FastCall (nargs=, args=0x7fffffff8bb0, func=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:147
#148 object_vacall (base=0x7fffffff8bb0, callable=0x7ffff7e5c430, vargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1187
#149 0x0000555555691c76 in _PyObject_CallMethodIdObjArgs (obj=0x7ffff7e50cc0, name=0x5555558ace60 <PyId__find_and_load.7>) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1245
#150 0x0000555555691173 in import_find_and_load (abs_name=0x7ffff351e440) at /usr/local/src/conda/python-3.8.13/Python/import.c:1698
#151 PyImport_ImportModuleLevelObject (name=0x7ffff351e440, globals=, locals=, fromlist=0x7ffff3515cd0, level=0) at /usr/local/src/conda/python-3.8.13/Python/import.c:1798
#152 0x0000555555673174 in import_name (level=0x5555558dece0 <small_ints+160>, fromlist=0x7ffff3515cd0, name=0x7ffff351e440, f=0x555557e65070, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:5139
#153 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:2993
#154 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e65070) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#155 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x0, kwcount=, kwstep=2, defs=0x0, defcount=0, kwdefs=0x0,
closure=0x0, name=0x0, qualname=0x0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#156 0x000055555572dde9 in PyEval_EvalCodeEx (_co=, globals=, locals=, args=, argcount=, kws=, kwcount=0, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0)
at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4327
#157 0x000055555572ddab in PyEval_EvalCode ([email protected]=0x7ffff3539c90, [email protected]=0x7ffff3517100, [email protected]=0x7ffff3517100) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:718
#158 0x000055555573211d in builtin_exec_impl (module=, locals=0x7ffff3517100, globals=0x7ffff3517100, source=0x7ffff3539c90) at /usr/local/src/conda/python-3.8.13/Python/bltinmodule.c:1025
#159 builtin_exec (module=, args=, nargs=) at /usr/local/src/conda/python-3.8.13/Python/clinic/bltinmodule.c.h:396
#160 0x0000555555680f88 in cfunction_vectorcall_FASTCALL ([email protected]=0x7ffff7e3d590, args=0x7ffff3513ad8, [email protected]=2, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/methodobject.c:426
#161 0x00005555556900bf in PyVectorcall_Call (callable=0x7ffff7e3d590, tuple=, kwargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:200
#162 0x0000555555674d2e in do_call_core (kwdict=0x7ffff3555440, callargs=0x7ffff3513ac0, func=0x7ffff7e3d590, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4983
#163 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3559
#164 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557df1360) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#165 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x555557e70678, kwcount=, kwstep=1, defs=0x0, defcount=0,
kwdefs=0x0, closure=0x0, name=0x7ffff7e46440, qualname=0x7ffff7e46440) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#166 0x000055555568033c in _PyFunction_Vectorcall (func=, stack=0x555557e70660, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#167 0x0000555555673ffc in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e70660, callable=0x7ffff7e57550) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#168 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#169 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3469
#170 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e704d0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#171 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#172 _PyFunction_Vectorcall (func=, stack=0x7ffe61d063b0, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#173 0x000055555566fd9d in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7ffe61d063b0, callable=0x7ffff7bed790) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#174 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#175 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3486
#176 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x7ffe61d06230) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#177 function_code_fastcall (globals=, nargs=1, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#178 _PyFunction_Vectorcall (func=, stack=0x555557e61170, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#179 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e61170, callable=0x7ffff7e59160) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
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#180 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#181 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#182 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e60fc0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#183 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#184 _PyFunction_Vectorcall (func=, stack=0x555557e6aa28, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#185 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e6aa28, callable=0x7ffff7e5c3a0) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#186 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#187 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#188 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e6a890) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#189 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#190 _PyFunction_Vectorcall (func=, stack=0x7fffffff9920, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#191 0x000055555567fb9e in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7fffffff9920, callable=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#192 _PyObject_FastCall (nargs=, args=0x7fffffff9920, func=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:147
#193 object_vacall (base=0x7fffffff9920, callable=0x7ffff7e5c430, vargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1187
#194 0x0000555555691c76 in _PyObject_CallMethodIdObjArgs (obj=0x7ffff7e50cc0, name=0x5555558ace60 <PyId__find_and_load.7>) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1245
#195 0x0000555555691173 in import_find_and_load (abs_name=0x7ffff350cd00) at /usr/local/src/conda/python-3.8.13/Python/import.c:1698
#196 PyImport_ImportModuleLevelObject (name=0x7ffe5f52c3f0, globals=, locals=, fromlist=0x7ffff35575f0, level=1) at /usr/local/src/conda/python-3.8.13/Python/import.c:1798
#197 0x0000555555673174 in import_name (level=0x5555558ded00 <small_ints+192>, fromlist=0x7ffff35575f0, name=0x7ffe5f52c3f0, f=0x555557e7b0e0, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:5139
#198 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:2993
#199 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e7b0e0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#200 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x0, kwcount=, kwstep=2, defs=0x0, defcount=0, kwdefs=0x0,
closure=0x0, name=0x0, qualname=0x0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#201 0x000055555572dde9 in PyEval_EvalCodeEx (_co=, globals=, locals=, args=, argcount=, kws=, kwcount=0, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0)
at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4327
#202 0x000055555572ddab in PyEval_EvalCode ([email protected]=0x7ffff35163a0, [email protected]=0x7ffff3513800, [email protected]=0x7ffff3513800) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:718
#203 0x000055555573211d in builtin_exec_impl (module=, locals=0x7ffff3513800, globals=0x7ffff3513800, source=0x7ffff35163a0) at /usr/local/src/conda/python-3.8.13/Python/bltinmodule.c:1025
#204 builtin_exec (module=, args=, nargs=) at /usr/local/src/conda/python-3.8.13/Python/clinic/bltinmodule.c.h:396
#205 0x0000555555680f88 in cfunction_vectorcall_FASTCALL ([email protected]=0x7ffff7e3d590, args=0x7ffff36e8298, [email protected]=2, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/methodobject.c:426
#206 0x00005555556900bf in PyVectorcall_Call (callable=0x7ffff7e3d590, tuple=, kwargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:200
#207 0x0000555555674d2e in do_call_core (kwdict=0x7ffff3513d80, callargs=0x7ffff36e8280, func=0x7ffff7e3d590, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4983
#208 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3559
#209 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e70e70) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#210 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x555557e6ce68, kwcount=, kwstep=1, defs=0x0, defcount=0,
kwdefs=0x0, closure=0x0, name=0x7ffff7e46440, qualname=0x7ffff7e46440) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#211 0x000055555568033c in _PyFunction_Vectorcall (func=, stack=0x555557e6ce50, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#212 0x0000555555673ffc in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e6ce50, callable=0x7ffff7e57550) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#213 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#214 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3469
#215 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e6ccc0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#216 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#217 _PyFunction_Vectorcall (func=, stack=0x555557e69190, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#218 0x000055555566fd9d in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e69190, callable=0x7ffff7bed790) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#219 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#220 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3486
#221 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e69010) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#222 function_code_fastcall (globals=, nargs=1, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#223 _PyFunction_Vectorcall (func=, stack=0x555557e7c130, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#224 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e7c130, callable=0x7ffff7e59160) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
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#225 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#226 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#227 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e7bf80) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#228 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#229 _PyFunction_Vectorcall (func=, stack=0x555557e83498, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#230 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e83498, callable=0x7ffff7e5c3a0) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#231 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#232 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#233 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e83300) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#234 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#235 _PyFunction_Vectorcall (func=, stack=0x7fffffffa690, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#236 0x000055555567fb9e in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7fffffffa690, callable=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#237 PyObject_FastCall (nargs=, args=0x7fffffffa690, func=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:147
#238 object_vacall (base=0x7fffffffa690, callable=0x7ffff7e5c430, vargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1187
#239 0x0000555555691c76 in PyObject_CallMethodIdObjArgs (obj=0x7ffff7e50cc0, name=0x5555558ace60 <PyId__find_and_load.7>) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1245
#240 0x0000555555691173 in import_find_and_load (abs_name=0x7ffff357d930) at /usr/local/src/conda/python-3.8.13/Python/import.c:1698
#241 PyImport_ImportModuleLevelObject (name=0x7ffff357d930, globals=, locals=, fromlist=0x0, level=0) at /usr/local/src/conda/python-3.8.13/Python/import.c:1798
#242 0x000055555569fc18 in builtin___import (self=, args=, kwds=) at /usr/local/src/conda/python-3.8.13/Python/bltinmodule.c:271
#243 0x000055555568fe7e in cfunction_call_varargs (kwargs=0x7ffff3513a00, args=0x7ffff3585640, func=0x7ffff7e3d130) at /usr/local/src/conda/python-3.8.13/Objects/call.c:743
#244 PyCFunction_Call (func=0x7ffff7e3d130, args=0x7ffff3585640, kwargs=0x7ffff3513a00) at /usr/local/src/conda/python-3.8.13/Objects/call.c:773
#245 0x0000555555674d2e in do_call_core (kwdict=0x7ffff3513a00, callargs=0x7ffff3585640, func=0x7ffff7e3d130, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4983
#246 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3559
#247 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e64000) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#248 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x555557e35080, kwcount=, kwstep=1, defs=0x0, defcount=0,
kwdefs=0x0, closure=0x0, name=0x7ffff7e46440, qualname=0x7ffff7e46440) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#249 0x000055555568033c in _PyFunction_Vectorcall (func=, stack=0x555557e35070, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#250 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e35070, callable=0x7ffff7e57550) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#251 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#252 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#253 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e34ec0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#254 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#255 _PyFunction_Vectorcall (func=, stack=0x555557e005c8, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#256 0x000055555566faab in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x555557e005c8, callable=0x7ffff7e5c3a0) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#257 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#258 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3500
#259 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e00430) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#260 function_code_fastcall (globals=, nargs=2, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#261 _PyFunction_Vectorcall (func=, stack=0x7fffffffae60, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#262 0x000055555567fb9e in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7fffffffae60, callable=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#263 PyObject_FastCall (nargs=, args=0x7fffffffae60, func=0x7ffff7e5c430) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:147
#264 object_vacall (base=0x7fffffffae60, callable=0x7ffff7e5c430, vargs=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1187
#265 0x0000555555691c76 in PyObject_CallMethodIdObjArgs (obj=0x7ffff7e50cc0, name=0x5555558ace60 <PyId__find_and_load.7>) at /usr/local/src/conda/python-3.8.13/Objects/call.c:1245
#266 0x0000555555691173 in import_find_and_load (abs_name=0x7ffff35db3f0) at /usr/local/src/conda/python-3.8.13/Python/import.c:1698
#267 PyImport_ImportModuleLevelObject (name=0x7ffff35db3f0, globals=, locals=, fromlist=0x7ffff357d0c0, level=0) at /usr/local/src/conda/python-3.8.13/Python/import.c:1798
#268 0x000055555569fc18 in builtin___import (self=, args=, kwds=) at /usr/local/src/conda/python-3.8.13/Python/bltinmodule.c:271
#269 0x000055555568fe7e in cfunction_call_varargs (kwargs=0x7ffff3513f00, args=0x7ffff36324c0, func=0x7ffff7e3d130) at /usr/local/src/conda/python-3.8.13/Objects/call.c:743
#270 PyCFunction_Call (func=0x7ffff7e3d130, args=0x7ffff36324c0, kwargs=0x7ffff3513f00) at /usr/local/src/conda/python-3.8.13/Objects/call.c:773
#271 0x0000555555678631 in _PyObject_MakeTpCall (callable=0x7ffff7e3d130, args=, nargs=, keywords=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:159
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#272 0x00005555556745df in _PyObject_Vectorcall (kwnames=0x7ffff7196a80, nargsf=, args=, callable=0x7ffff7e3d130) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:125
#273 _PyObject_Vectorcall (kwnames=0x7ffff7196a80, nargsf=, args=, callable=0x7ffff7e3d130) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:115
#274 call_function (kwnames=0x7ffff7196a80, oparg=, pp_stack=, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#275 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3515
#276 0x00005555556802a6 in PyEval_EvalFrameEx (throwflag=0, f=0x555557e507d0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#277 function_code_fastcall (globals=, nargs=1, args=, co=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:284
#278 _PyFunction_Vectorcall (func=, stack=0x7ffff360c570, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:411
#279 0x000055555566fd9d in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7ffff360c570, callable=0x7ffff6c8bb80) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#280 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#281 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3486
#282 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x7ffff360c3e0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741

#283 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x7ffff74329b0, kwcount=, kwstep=1, defs=0x7ffff71981a8,
defcount=1, kwdefs=0x0, closure=0x0, name=0x7ffff7bd4df0, qualname=0x7ffff7196a30) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#284 0x000055555568033c in _PyFunction_Vectorcall (func=, stack=0x7ffff74329a8, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#285 0x000055555566fd9d in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7ffff74329a8, callable=0x7ffff6c8baf0) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#286 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#287 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3486
#288 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x7ffff7432800) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#289 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x7ffe6164af58, kwargs=0x7ffe6157db30, kwcount=, kwstep=1, defs=0x0,
defcount=0, kwdefs=0x0, closure=0x0, name=0x7ffff764bbb0, qualname=0x7ffe615c2da0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#290 0x000055555568f85c in _PyFunction_Vectorcall (kwnames=, nargsf=, stack=0x7ffe6157db28, func=0x7ffe615cd700) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#291 _PyObject_Vectorcall (kwnames=, nargsf=, args=0x7ffe6157db28, callable=0x7ffe615cd700) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#292 method_vectorcall (method=, args=0x7ffe6157db30, nargsf=, kwnames=) at /usr/local/src/conda/python-3.8.13/Objects/classobject.c:60
#293 0x0000555555670808 in _PyObject_Vectorcall (kwnames=0x7ffe6164af40, nargsf=, args=, callable=0x7ffff77eee40) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:127
#294 call_function (kwnames=0x7ffe6164af40, oparg=, pp_stack=, tstate=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#295 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3515
#296 0x000055555566e957 in PyEval_EvalFrameEx (throwflag=0, f=0x7ffe6157d9a0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#297 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=, kwargs=0x7fffffffba08, kwcount=, kwstep=1,
defs=0x7ffe615ce268, defcount=1, kwdefs=0x0, closure=0x7ffe615ce580, name=0x7ffff7e70570, qualname=0x7ffe615c2b70) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#298 0x00005555556b9283 in _PyFunction_Vectorcall (kwnames=0x0, nargsf=, stack=, func=0x7ffe615cd5e0) at /usr/local/src/conda/python-3.8.13/Objects/call.c:436
#299 _PyObject_FastCallDict (kwargs=0x0, nargsf=, args=, callable=0x7ffe615cd5e0) at /usr/local/src/conda/python-3.8.13/Objects/call.c:96
#300 _PyObject_Call_Prepend (kwargs=0x0, args=0x7ffe615cd5e0, obj=0x7fffffffba08, callable=0x7ffe615cd5e0) at /usr/local/src/conda/python-3.8.13/Objects/call.c:888
#301 slot_tp_new ([email protected]=0x5555567a3c90, [email protected]=0x7ffff7e6f040, [email protected]=0x0) at /usr/local/src/conda/python-3.8.13/Objects/typeobject.c:6819
#302 0x00005555556782ac in type_call (kwds=0x0, args=0x7ffff7e6f040, type=0x5555567a3c90) at /usr/local/src/conda/python-3.8.13/Objects/typeobject.c:974
#303 _PyObject_MakeTpCall (callable=0x5555567a3c90, args=0x7ffff7bf7f48, nargs=0, keywords=0x0) at /usr/local/src/conda/python-3.8.13/Objects/call.c:159
#304 0x0000555555674481 in _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7ffff7bf7f48, callable=0x5555567a3c90) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:125
#305 _PyObject_Vectorcall (kwnames=0x0, nargsf=, args=0x7ffff7bf7f48, callable=0x5555567a3c90) at /usr/local/src/conda/python-3.8.13/Include/cpython/abstract.h:115
#306 call_function (kwnames=0x0, oparg=, pp_stack=, tstate=0x5555558e5ed0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4963
#307 _PyEval_EvalFrameDefault (f=, throwflag=) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:3469
#308 0x000055555566e461 in PyEval_EvalFrameEx (throwflag=0, f=0x7ffff7bf7dd0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:741
#309 _PyEval_EvalCodeWithName (_co=, globals=, locals=, args=, argcount=, kwnames=0x0, kwargs=0x0, kwcount=, kwstep=2, defs=0x0, defcount=0, kwdefs=0x0,
closure=0x0, name=0x0, qualname=0x0) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4298
#310 0x000055555572dde9 in PyEval_EvalCodeEx (_co=, globals=, locals=, args=, argcount=, kws=, kwcount=0, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0)
at /usr/local/src/conda/python-3.8.13/Python/ceval.c:4327
#311 0x000055555572ddab in PyEval_EvalCode ([email protected]=0x7ffff7b0e870, [email protected]=0x7ffff7bcce40, [email protected]=0x7ffff7bcce40) at /usr/local/src/conda/python-3.8.13/Python/ceval.c:718
#312 0x000055555574e903 in run_eval_code_obj (co=0x7ffff7b0e870, globals=0x7ffff7bcce40, locals=0x7ffff7bcce40) at /usr/local/src/conda/python-3.8.13/Python/pythonrun.c:1166
#313 0x000055555574d8e3 in run_mod (mod=, filename=, globals=0x7ffff7bcce40, locals=0x7ffff7bcce40, flags=, arena=) at /usr/local/src/conda/python-3.8.13/Python/pythonrun.c:1188
#314 0x000055555574b2ad in PyRun_StringFlags (str=, start=257, globals=0x7ffff7bcce40, locals=0x7ffff7bcce40, flags=0x7fffffffbdf8) at /usr/local/src/conda/python-3.8.13/Python/pythonrun.c:1061
--Type for more, q to quit, c to continue without paging--

#315 0x00005555555e1f90 in PyRun_SimpleStringFlags (command=0x7ffff7bb2f00 "import qiime2.sdk; qiime2.sdk.PluginManager();\n", [email protected]=0x7fffffffbdf8) at /usr/local/src/conda/python-3.8.13/Python/pythonrun.c:486
#316 0x000055555574a79b in pymain_run_command (cf=0x7fffffffbdf8, command=) at /usr/local/src/conda/python-3.8.13/Modules/main.c:262
#317 pymain_run_python (exitcode=0x7fffffffbdf0) at /usr/local/src/conda/python-3.8.13/Modules/main.c:605
#318 Py_RunMain () at /usr/local/src/conda/python-3.8.13/Modules/main.c:693
#319 0x0000555555722219 in Py_BytesMain (argc=, argv=) at /usr/local/src/conda/python-3.8.13/Modules/main.c:1113

#320 0x00007ffff7c23510 in __libc_start_call_main ([email protected]=0x5555557221d0 , [email protected]=3, [email protected]=0x7fffffffc028) at ../sysdeps/nptl/libc_start_call_main.h:58
#321 0x00007ffff7c235c9 in __libc_start_main_impl (main=0x5555557221d0 , argc=3, argv=0x7fffffffc028, init=, fini=, rtld_fini=, stack_end=0x7fffffffc018) at ../csu/libc-start.c:381
#322 0x0000555555722125 in _start ()

more_info.txt (199.0 KB)

ebolyen · October 21, 2022, 4:44pm

ebolyen · October 21, 2022, 4:59pm

Hey @williamshell!

Thanks for the detailed report! Looks like there may be an issue with unifrac. The SIGILL code suggests that libssu.so has requested some operation that your CPU doesn't understand.

Just like in the last thread, could you provide some more info about your OS environment?
You mention Ubuntu 22.04, is there any hypervisor or VM system running in between that, or is it installed on bare-metal like a normal OS install?

Also, since we'll likely be dealing with CPU instructions, could you print what instructions are available with this command:

cat /proc/cpuinfo > cpuinfo.txt

Given you have had a working environment before, I suspect there may be something off about the current build.

Would you be able to show the results of these commands in both your working 2022.2 environment and your 2022.8 environment?

conda list unifrac-binaries

and

conda list | grep qiime2

(that should be an easy way to pull versions of all the plugins)

@wasade, I'm unfamiliar with the internals, but does the biom handling do anything particularly interesting? It looks like the compiled symbol is __sti___8_biom_cpp_b3a46038 in case that helps.

Looking at the GDB (nice thinking btw) I don't see anything exciting happening outside of loading libc and presumably getting a CPU error immediately.

wasade · October 21, 2022, 5:21pm

We compile against many targets, agree the CPU info will be valuable here. The symbol is unfortunately not super meaningful, other than (a) it may be an in an OpenMP section as part of BIOM load or (b) interacting with HDF5 (I don't recall what q2-diversity-lib does though so perhaps not). We don't use intrinsics or ASM in the BIOM logic so it would be a compiler decision on the instruction used. The CPU info will describe what instruction sets are available on the system though, and we should be able to make a quick interpretation of that -- most likely something unexpected about the architecture.

Best,
Daniel

williamshell · October 23, 2022, 3:52am

Hi @ebolyen !

Thanks for your quick reply. I have updated my OS to Ubuntu 22.10 using the following command. There is no any hypervisor or VM system running in. It's a native installation.

sudo do-release-upgrade

Here is my CPU infomation.
cpuinfo.txt (46.3 KB)

Here are my outputs of 2022.2 and 2022.8 envirment.

conda activate qiime2-2022.2
conda list unifrac-binaries

图片868×60 2.78 KB

conda list | grep qiime2

图片1201×570 14.8 KB

conda activate qiime2-2022.8

图片1384×42 3.51 KB

conda list unifrac-binaries

图片1222×84 4.88 KB

conda list | grep qiime2

图片1195×561 14.5 KB

ebolyen · October 26, 2022, 6:30pm

Hi @williamshell,

Your CPU seems to be a very standard 2011-era x86 xeon processor. There's really no reason to be seeing an illegal instruction given those instruction sets:

fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 
clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp 
lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc 
cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl smx est tm2 ssse3 
cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic popcnt aes lahf_lm pti ssbd
ibrs ibpb stibp dtherm arat flush_l1d

You've got all of the commonly used SIMD instructions (sse and sse2).

Interestingly, it appears that unifrac-binaries is on the wrong build number. We should be seeing build 4 instead of build 1 (which has some misconfigured dependencies).

I expect this is because you are behind a mirror (http://mirrors.tuna.tsinghau.edu.cn/anaconda/cloud). It may not be fetching the latest build versions because conda technically "solves" things with build 1.

This alone doesn't explain the illegal instruction yet, but if we extrapolate this stale-build behavior out, I could definitely see some C linked-library using an inappropriate instruction (some local patch forgot an #ifdef somewhere for example) which was caught and a new build was pushed to anaconda.org which your mirror is similarly unaware of.

I've done a fresh conda-resolution with our 2022.8 environment and left the build numbers in. I'm not entirely sure how your mirror is going to behave, but if it's a transparent mirror, then it might just work, or at least give you a starting point.

qiime2-2022.8-py38-linux-conda-WITH-BUILDS.yml (15.0 KB)

(use the same instructions as a regular install, just use this yml file instead of the one from wget)

williamshell · November 2, 2022, 3:07am

Hi @ebolyen ,
I was following your suggestion. I did not use the mirror. However, the same problem arised.

conda list unifrac-binaries

图片731×84 3.69 KB

conda list | grep qiime2

图片830×561 13 KB

ebolyen · November 3, 2022, 5:39pm

Hi @williamshell,

Apologies, it looks like my conda resolver used a cached version of unifrac-binaries as well so I gave you a file with yet the wrong build number.

That said I hadn't expected unifrac-binaries to actually be the issue, so I've created a new env file with the build number corrected. It seems to install just fine locally and I don't see any illegal instructions.

Please try this environment file instead:

qiime2-2022.8-py38-linux-conda_WITH-BUILDS.yml (15.0 KB)

If you still get the issue, then perhaps the difference between my cpuinfo would be useful:

fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 
clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm 
constant_tsc art arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc 
cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx est tm2 ssse3 sdbg 
fma cx16 xtpr pdcm pcid sse4_1 sse4_2 x2apic movbe popcnt tsc_deadline_timer 
aes xsave avx f16c rdrand lahf_lm abm 3dnowprefetch cpuid_fault epb 
invpcid_single ssbd ibrs ibpb stibp ibrs_enhanced tpr_shadow vnmi flexpriority
ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid mpx 
rdseed adx smap clflushopt intel_pt xsaveopt xsavec xgetbv1 xsaves dtherm 
ida arat pln pts hwp hwp_notify hwp_act_window hwp_epp pku ospke md_clear 
flush_l1d arch_capabilities

(I don't have any mixed cores (same as you) like the latest gen of Intel CPUs have been doing, so these are all of the flags)

williamshell · November 7, 2022, 1:49am

Hi @ebolyen,
The problem can not be solved.

conda list unifrac-binaries

图片836×84 3.92 KB

ebolyen · November 7, 2022, 4:44pm

Thank you @williamshell, I'm afraid I'm at a bit of a loss then.

There must be some instruction being used that hadn't been before this release in one of the many many dependencies.

Just to confirm, you have a working 2022.2 installation? It may be best to stick with that while we try to figure this out.

williamshell · November 8, 2022, 1:15am

Hi @ebolyen ,
Thanks for your reply.
I have successfully install v2022.2. It seems that unifrac-binaries was not installed, while qiime works well.

lizgehret · November 9, 2022, 7:02pm

system · December 11, 2022, 1:02am

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