Hi,
Recently, I have been playing with MICOM within QIIME2 after seeing @cdiener present it at ISB2020. There is one feature in that notebook that I can't figure out within the q2 plugin. Is it possible to identify the primary genera responsible for certain metabolite flux within the plugin, or do I need to rerun it all in Python? The function I am talking about in the ISB2020 notebook is here:
I found the "Getting growth and flux data for additional analyses" in the q2-micom tutorial, but it only seems to extract sample level fluxes (I am looking for genus level) and growth rates.
Thanks for the help!