Identify significant taxa using R-ANCOM-2

[vheidrich (Vitor Heidrich)]

Hi Maysa,

@maysa1

Can I consider W value(340)as a significant result?

I believe the answer is yes, as that dashed line (W-0.7) represents the default significance threshold.

@maysa1

there is a way to identify the differentially represented ASVs at Genes level? I am asking if there is a way to collapse taxa like we did when we use q2-ANCOM?

Yes again! You can pick the very same collapsed feature-table that you generated before using q2-ANCOM, load it in R using the qiime2R package and run the ANCOM R script with the collapsed feature-table.

Hope this helps!