I used de novo clustering and now I want to identify which sequences belong to each cluster.

[Achraf_Zbaida (Achraf Zbaïda)]

I used de novo clustering and now I want to identify which sequences belong to each cluster.

qiime vsearch cluster-features-de-novo
--i-table table.qza
--i-sequences rep-seqs.qza
--p-perc-identity 0.97
--o-clustered-table table-dn-97.qza
--o-clustered-sequences rep-seqs-dn-97.qza

[colinbrislawn (Colin J Brislawn)]

Hello Achraf,

This information is in the .uc file, which is not exported by this pipeline...

But it could be! Expose `FeatureMap` data when clustering · Issue #93 · qiime2/q2-vsearch · GitHub